Multi-domain automated lung segmentation for inflammatory lung disease (ILD) detection
PO-1256
Abstract
Multi-domain automated lung segmentation for inflammatory lung disease (ILD) detection
Authors: Andrew Hope1, Chris McIntosh2, Mattea Welch3, Sonja Kandel4, Thomas Purdie5, Tony Tadic2, Tirth Patel2
1Princess Margaret Cancer Center / University of Toronto, Radiation Medicine Program / Radiation Oncology, Toronto, Canada; 2Princess Margaret Cancer Center, Radiation Medicine Program, Toronto, Canada; 3Princess Margaret Cancer Center, Data Science, Toronto, Canada; 4University Health Network, Joint Department of Medical Imaging, Toronto, Canada; 5Princess Margaret Cancer Center / University of Toronto, Radiation Medicine Program / Medical Biophysics, Toronto, Canada
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Purpose or Objective
ILD
can predispose patients to high risk of pulmonary complications or even death
following high dose radiation therapy.
Unfortunately, not all patients with ILD are known at the time of radiation treatment decision. Automated methods to detect ILD on diagnostic and/or
planning CTs would provide multiple checks to ensure patient safety, but requires
high quality lung segmentation of both patients with and without ILD as a
prerequisite.
Material and Methods
Using
a training set (TRN) of 214 radiation planning
computed tomographic (CT) images from NSCLC patients including cases with
and without ILD, a convolutional neural net (CNN) was trained to automatically
segment the lungs within these scans. We trained a CNN based on the U-Net topology but using 3D convolution
filters in place of the traditional 2D. Due to memory limitations all images
resampled to 256x256x128. After
training, two validation datasets were generated composed of radiation
treatment planning CTs from NSCLC patients (VAL1, n=24) and a set of diagnostic
thoracic CT images (VAL2, n=100). All
patients in VAL2 were further labeled by the same radiologist as to whether ILD
was radiographically present or absent.
Test characteristics of the CNN were calculated using the Dice metric on
VAL1, and qualitative inspection on VAL2.
Results
After
training, the CNN demonstrated Dice of 0.96 on VAL1 and strong qualitative
agreement on VAL2, uniquely demonstrating that a CNN can be trained on RT planning
CTs to segment both planning and diagnostic imaging. The CNN takes on average
4.5 seconds to segment a novel image with roughly half that time dedicated to
reading the image from disk. ILD was present in 20% of cases in VAL2.
Conclusion
A CNN has been developed that can rapidly segment radiation
treatment planning CT or diagnostic CTs to enable downstream automation of a
system to identify patients at high risk of having pre-existing ILD. After prospective validation, this tool and
similar tools could be incorporated into radiation treatment planning systems to
automatically alert clinicians about high-risk patients that might have
proceeded to treatment planning without having pre-existing ILD identified.